Protein modeling examples

CpIII_Fdx_docking_vid.mp4

Protein docking video

Here, multiple protein conformations were calculated using AlphaFold, and a docking model of the protein-protein interactions was generated via AlphaFold-Multimer.

Protein-cofactor interactions

Here, FeS clusters were docked into two AlphaFold structures (purple and brown) in order to understand possible electron-transfer distances.

Inverse Folding

The native protein, PDB 3C8Y (pink), compared to the inverse-folded protein (blue) with 64.1% sequence identity.